PDA-Pred: Predicting the binding affinity of protein-DNA complexes using machine learning techniques and structural features-Reference-Cited by-同舟云学术

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PDA-Pred: Predicting the binding affinity of protein-DNA complexes using machine learning techniques and structural features

Published:2023-05 Issue: Volume:213 Page:10-17
ISSN:1046-2023
Container-title:Methods
language:en
Short-container-title:Methods

Author:

Harini K.,Kihara Daisuke,Michael Gromiha M.

Funder

National Institutes of Health

Ministry of Science and Technology, Government of Nepal

Science and Engineering Research Board

National Science Foundation

Publisher

Elsevier BV

Subject

General Biochemistry, Genetics and Molecular Biology,Molecular Biology

Reference31 articles.

1. Human single-stranded DNA binding proteins: guardians of genome stability;Wu;Acta Biochim. Biophy. Sin.,2016

2. Computational approaches for predicting the binding sites and understanding the recognition mechanism of protein-DNA complexes;Gromiha;Adv. Protein Chem. Struct. Biol.,2013

3. Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins;Nagarajan;Nucleic Acids Res.,2013

4. An overview of the prediction of protein DNA-binding sites;Si;Int. J. Mol. Sci.,2015

5. Computational structure modeling for diverse categories of macromolecular interactions;Aderinwale;Curr. Opin. Struct. Biol.,2020

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2. AP2/ERF transcription factors enriched in the drought-response transcriptome of the Thar desert treeProsopis cinerariashow higher copy number and greater DNA-binding affinity than orthologs in drought-sensitive species;2024-06-19

3. Single Effective Complex Loading into Zero-Mode Waveguides Optimized with Fluorescence Evaluation at Quenching and Accumulation Checkpoints;ACS Applied Materials & Interfaces;2024-05-14

4. DeePNAP: A Deep Learning Method to Predict Protein–Nucleic Acid Binding Affinity from Their Sequences;Journal of Chemical Information and Modeling;2024-03-08

5. PRA-Pred: Structure-based prediction of protein-RNA binding affinity;International Journal of Biological Macromolecules;2024-02

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