What have molecular simulations contributed to understanding of Gram-negative bacterial cell envelopes?

Author:

Khalid Syma1ORCID,Schroeder Cyril1,Bond Peter J.23ORCID,Duncan Anna L.1ORCID

Affiliation:

1. Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK

2. Department of Biological Sciences, National University of Singapore, Singapore 117543, Singapore

3. Bioinformatics Institute (A*STAR), Singapore 138671, Singapore

Abstract

Bacterial cell envelopes are compositionally complex and crowded and while highly dynamic in some areas, their molecular motion is very limited, to the point of being almost static in others. Therefore, it is no real surprise that studying them at high resolution across a range of temporal and spatial scales requires a number of different techniques. Details at atomistic to molecular scales for up to tens of microseconds are now within range for molecular dynamics simulations. Here we review how such simulations have contributed to our current understanding of the cell envelopes of Gram-negative bacteria.

Funder

Engineering and Physical Sciences Research Council

Department of Biochemistry, University of Oxford, GB

IBM and EPSRC

Bioinformatics Institute, A*STAR

Publisher

Microbiology Society

Subject

Microbiology

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