Genome-based reclassification of Deinococcus saudiensis Hussain et al. 2016 as a later heterotypic synonym of Deinococcus soli Cha et al. 2014

Author:

Wang Di1,Li Mengyuan1,Yang Yuxue1,Gao Yuxin2,Liu Bilin1,Wu Weichao1,Xu Yunping1,Wei Yuli31ORCID

Affiliation:

1. Shanghai Engineering Research Center of Hadal Science and Technology, College of Marine Sciences, Shanghai Ocean University, Shanghai 201306, PR China

2. State Key Laboratory of Marine Geology, Tongji University, Shanghai 200092, PR China

3. National Engineering Research Center for Oceanic Fisheries, Shanghai Ocean University, Shanghai 201306, PR China

Abstract

Deinococcus saudiensis YIM F302T was compared with Deinococcus soli N5T to examine the taxonomic relationship between the two type strains. The 16S rRNA gene sequence of D. saudiensis YIM F302T showed high similarity (99.9 %) to that of D. soli N5T. The results of phylogenetic analyses based on 16S rRNA gene sequences indicated that the two strains formed a tight cluster within the genus Deinococcus . A draft genomic comparison between the two strains revealed average nucleotide identity values of 96.8–97.9 % and a digital DNA–DNA hybridization estimate of 80.7±1.9 %, strongly indicating that the two strains represented a single species. Based on the combined phylogenetic, genomic and phenotypic characterization presented here, we propose D. saudiensis as a later heterotypic synonym of D. soli N5T.

Funder

the National Natural Science Foundation of China

Publisher

Microbiology Society

Subject

General Medicine,Ecology, Evolution, Behavior and Systematics,Microbiology

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