1. Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115, USA.
2. Institute for Medical Engineering and Science, Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
3. Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
4. Division of Infectious Diseases, Department of Pediatrics, Boston Children’s Hospital, Boston, MA 02115, USA.
5. Division of Infectious Diseases, Department of Medicine, Beth Israel Deaconess Medical Center, Boston, MA 02215, USA.
6. Harvard Medical School, Boston, MA 02115, USA.
7. MIT Media Lab, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
8. Division of Gastroenterology, Massachusetts General Hospital, Boston, MA 02114, USA.
9. Abdul Latif Jameel Clinic for Machine Learning in Health, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
10. College of Arts and Sciences, Harvard University, Cambridge, MA 02138, USA.