Human virome profiling identified CMV as the major viral driver of a high accumulation of senescent CD8 + T cells in patients with advanced NSCLC

Author:

Naigeon Marie123ORCID,Roulleaux Dugage Matthieu145ORCID,Danlos François-Xavier256ORCID,Boselli Lisa1,Jouniaux Jean-Mehdi1,de Oliveira Caroline1ORCID,Ferrara Roberto17,Duchemann Boris18ORCID,Berthot Caroline1ORCID,Girard Lou13,Flippot Ronan12,Albiges Laurence29ORCID,Farhane Siham56ORCID,Saulnier Patrick10,Lacroix Ludovic1011ORCID,Griscelli Frank11,Roman Gabriel12,Hulett Tyler12ORCID,Marabelle Aurélien56ORCID,Cassard Lydie1,Besse Benjamin29ORCID,Chaput Nathalie13ORCID

Affiliation:

1. Laboratoire d'Immunomonitoring en Oncologie, INSERM US23, CNRS UMS 3655, Gustave Roussy, Villejuif, France.

2. Faculté de Médecine, Université Paris-Saclay, Le Kremlin-Bicêtre, France.

3. Faculté de Pharmacie, Université Paris-Saclay, Orsay, France.

4. Service d’Oncologie Médicale, Hôpital Européen Georges Pompidou, AP-HP, Paris, France.

5. Département d’Innovation Thérapeutique et d’Essais Précoces (DITEP), Gustave Roussy, Villejuif, France.

6. Laboratoire de Recherche Translationnelle en Immunothérapie (LRTI), INSERM U1015 and Centre d’Investigation Clinique BIOTHERIS, INSERM CIC1428, Gustave Roussy, Villejuif, France.

7. Università Vita-Salute San Raffaele, Milan, Italy.

8. Département d’oncologie thoracique et médicale, Hôpitaux Universitaires Paris Seine-Saint-Denis, Hôpital Avicenne, AP-HP, Bobigny, France.

9. Département de Médecine Oncologique, Gustave Roussy, Villejuif, France.

10. AMMICa, UAR 3655/US23, Gustave Roussy, Villejuif, France.

11. Département de Biologie Médicale et Pathologie Médicales, Gustave Roussy, Villejuif, France.

12. CDI Laboratories Inc., 1 N. Haven Street, Suite B001, Baltimore, MD 21224, USA.

Abstract

Circulating senescent CD8 + T (T 8 sen) cells are characterized by a lack of proliferative capacities but retain cytotoxic activity and have been associated to resistance to immunotherapy in patients with advanced non–small cell lung cancer (aNSCLC). We aimed to better characterize T 8 sen and to determine which factors were associated with their accumulation in patients with aNSCLC. Circulating T 8 sen cells were characterized by a higher expression of SA-βgal and the transcription factor T-bet, confirming their senescent status. Using whole virome profiling, cytomegalovirus (CMV) was the only virus associated with T 8 sen. CMV was necessary but not sufficient to explain high accumulation of T 8 sen (T 8 sen high status). In CMV + patients, the proportion of T 8 sen cells increased with cancer progression. Last, CMV-induced T 8 sen high phenotype but not CMV seropositivity itself was associated with worse progression-free and overall survival in patients treated with anti–PD-(L)1 therapy but not with chemotherapy. Overall, CMV is the unique viral driver of T 8 sen-driven resistance to anti–PD-(L)1 antibodies in patients with aNSCLC.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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