Evolution and epidemic spread of SARS-CoV-2 in Brazil-Reference-Cited by-同舟云学术

Evolution and epidemic spread of SARS-CoV-2 in Brazil

Published:2020-09-04 Issue:6508 Volume:369 Page:1255-1260
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Candido Darlan S.¹²^ORCID,Claro Ingra M.²³^ORCID,de Jesus Jaqueline G.²³^ORCID,Souza William M.⁴^ORCID,Moreira Filipe R. R.⁵^ORCID,Dellicour Simon⁶⁷^ORCID,Mellan Thomas A.⁸^ORCID,du Plessis Louis¹^ORCID,Pereira Rafael H. M.⁹^ORCID,Sales Flavia C. S.²³^ORCID,Manuli Erika R.²³^ORCID,Thézé Julien¹⁰^ORCID,Almeida Luiz¹¹^ORCID,Menezes Mariane T.⁵^ORCID,Voloch Carolina M.⁵^ORCID,Fumagalli Marcilio J.⁴^ORCID,Coletti Thaís M.²³^ORCID,da Silva Camila A. M.²³^ORCID,Ramundo Mariana S.²³^ORCID,Amorim Mariene R.¹²^ORCID,Hoeltgebaum Henrique H.¹³^ORCID,Mishra Swapnil⁸^ORCID,Gill Mandev S.⁷^ORCID,Carvalho Luiz M.¹⁴^ORCID,Buss Lewis F.²^ORCID,Prete Carlos A.¹⁵^ORCID,Ashworth Jordan¹⁶^ORCID,Nakaya Helder I.¹⁷^ORCID,Peixoto Pedro S.¹⁸^ORCID,Brady Oliver J.¹⁹²⁰,Nicholls Samuel M.²¹^ORCID,Tanuri Amilcar⁵^ORCID,Rossi Átila D.⁵^ORCID,Braga Carlos K. V.⁹^ORCID,Gerber Alexandra L.¹¹^ORCID,de C. Guimarães Ana Paula¹¹^ORCID,Gaburo Nelson²²,Alencar Cecila Salete²³^ORCID,Ferreira Alessandro C. S.²⁴^ORCID,Lima Cristiano X.²⁵²⁶^ORCID,Levi José Eduardo²⁷^ORCID,Granato Celso²⁸,Ferreira Giulia M.²⁹^ORCID,Francisco Ronaldo S.¹¹^ORCID,Granja Fabiana¹²³⁰^ORCID,Garcia Marcia T.³¹^ORCID,Moretti Maria Luiza³¹,Perroud Mauricio W.³²^ORCID,Castiñeiras Terezinha M. P. P.³³^ORCID,Lazari Carolina S.³⁴,Hill Sarah C.¹³⁵,de Souza Santos Andreza Aruska³⁶,Simeoni Camila L.¹²^ORCID,Forato Julia¹²^ORCID,Sposito Andrei C.³⁷^ORCID,Schreiber Angelica Z.³⁸^ORCID,Santos Magnun N. N.³⁸,de Sá Camila Zolini³⁹^ORCID,Souza Renan P.³⁹^ORCID,Resende-Moreira Luciana C.⁴⁰^ORCID,Teixeira Mauro M.⁴¹^ORCID,Hubner Josy⁴²^ORCID,Leme Patricia A. F.⁴³^ORCID,Moreira Rennan G.⁴⁴^ORCID,Nogueira Maurício L.⁴⁵^ORCID,Ferguson Neil M.⁸^ORCID,Costa Silvia F.²³^ORCID,Proenca-Modena José Luiz¹²^ORCID,Vasconcelos Ana Tereza R.¹¹^ORCID,Bhatt Samir⁸^ORCID,Lemey Philippe⁷^ORCID,Wu Chieh-Hsi⁴⁶^ORCID,Rambaut Andrew⁴⁷^ORCID,Loman Nick J.²¹^ORCID,Aguiar Renato S.³⁹^ORCID,Pybus Oliver G.¹^ORCID,Sabino Ester C.²³^ORCID,Faria Nuno Rodrigues¹²⁸^ORCID,

Affiliation:

1. Department of Zoology, University of Oxford, Oxford, UK.

2. Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil.

3. Departamento de Moléstias Infecciosas e Parasitárias, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil.

4. Centro de Pesquisa em Virologia, Faculdade de Medicina de Ribeirão Preto, Ribeirão Preto, Brazil.

5. Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.

6. Spatial Epidemiology Lab, Université Libre de Bruxelles, Brussels, Belgium.

7. Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.

8. MRC Centre for Global Infectious Disease Analysis, J-IDEA, Imperial College London, London, UK.

9. Institute for Applied Economic Research, Brasília, Brazil.

10. Université Clermont Auvergne, INRAE, VetAgro Sup, UMR EPIA, Saint-Genès-Champanelle, France.

11. Laboratório de Bioinformática, Laboratório Nacional de Computação Científica, Petrópolis, Brazil.

12. Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, Brazil.

13. Department of Mathematics, Imperial College London, London, UK.

14. Escola de Matemática Aplicada (EMAp), Fundação Getúlio Vargas, Rio de Janeiro, Brazil.

15. Department of Electronic Systems Engineering, University of São Paulo, São Paulo, Brazil.

16. Usher Institute, University of Edinburgh, Edinburgh, UK.

17. Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil.

18. Departamento de Matemática Aplicada, Instituto de Matemática e Estatística, Universidade de São Paulo, São Paulo, Brazil.

19. Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, UK.

20. Centre for the Mathematical Modelling of Infectious Diseases, London School of Hygiene & Tropical Medicine, London, UK.

21. Institute for Microbiology and Infection, University of Birmingham, Birmingham, UK.

22. DB Diagnósticos do Brasil, São Paulo, Brazil.

23. LIM 03 Laboratório de Medicina Laboratorial, Hospital das Clínicas Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil.

24. Instituto Hermes Pardini, Belo Horizonte, Brazil.

25. Departamento de Cirurgia, Faculdade de Medicina, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.

26. Simile Instituto de Imunologia Aplicada Ltda, Belo Horizonte, Brazil.

27. Laboratório DASA, São Paulo, Brazil.

28. Laboratório Fleury, São Paulo, Brazil.

29. Laboratório de Virologia, Instituto de Ciências Biomédicas, Universidade Federal de Uberlândia, Uberlândia, Brazil.

30. Centro de Estudos da Biodiversidade, Universidade Federal de Roraima, Boa Vista, Brazil.

31. Divisão de Doenças Infecciosas, Faculdade de Ciências Médicas, Universidade Estadual de Campinas, Campinas, Brazil.

32. Hospital Estadual Sumaré, Universidade Estadual de Campinas, Campinas, Brazil.

33. Departamento de Doenças Infecciosas e Parasitárias, Faculdade de Medicina, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.

34. Divisão de Laboratório Central do Hospital das Clínicas, da Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil.

35. Department of Pathobiology and Population Sciences, Royal Veterinary College, Hatfield, UK.

36. University of Oxford, Latin American Centre, Oxford School of Global and Area Studies, Oxford, UK.

37. Departamento de Clínica Médica, Faculdade de Ciências Médicas, Universidade Estadual de Campinas, Campinas, Brazil.

38. Departamento de Patologia Clínica, Faculdade de Ciências Médicas, Universidade Estadual de Campinas, Campinas, Brazil.

39. Departamento de Genética, Ecologia e Evolução, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.

40. Departamento de Botânica, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.

41. Departamento de Bioquímica e Imunologia, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.

42. Departamento de Biologia Celular, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.

43. Centro de Saúde da Comunidade, Universidade Estadual de Campinas, Campinas, Brazil.

44. Centro de Laboratórios Multiusuários, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.

45. Laboratório de Pesquisas em Virologia, Faculdade de Medicina de São José do Rio Preto, São José do Rio Preto, São Paulo, Brazil.

46. Mathematical Sciences, University of Southampton, Southampton, UK.

47. Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.

Abstract

The spread of SARS-CoV-2 in Brazil Brazil has been hard-hit by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic. Candido et al. combined genomic and epidemiological analyses to investigate the impact of nonpharmaceutical interventions (NPIs) in the country. By setting up a network of genomic laboratories using harmonized protocols, the researchers found a 29% positive rate for SARS-CoV-2 among collected samples. More than 100 international introductions of SARS-CoV-2 into Brazil were identified, including three clades introduced from Europe that were already well established before the implementation of NPIs and travel bans. The virus spread from urban centers to the rest of the country, along with a 25% increase in the average distance traveled by air passengers before travel bans, despite an overall drop in short-haul travel. Unfortunately, the evidence confirms that current interventions remain insufficient to keep virus transmission under control in Brazil. Science , this issue p. 1255

Funder

Medical Research Council

São Paulo Research Foundation

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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