Kinase-impaired BTK mutations are susceptible to clinical-stage BTK and IKZF1/3 degrader NX-2127

Author:

Montoya Skye1ORCID,Bourcier Jessie2ORCID,Noviski Mark3ORCID,Lu Hao3,Thompson Meghan C.4ORCID,Chirino Alexandra1ORCID,Jahn Jacob1ORCID,Sondhi Anya K.1ORCID,Gajewski Stefan3ORCID,Tan Ying Siow (May)3ORCID,Yung Stephanie3,Urban Aleksandra56ORCID,Wang Eric7,Han Cuijuan7ORCID,Mi Xiaoli2ORCID,Kim Won Jun2ORCID,Sievers Quinlan2ORCID,Auger Paul3ORCID,Bousquet Hugo3,Brathaban Nivetha3,Bravo Brandon3,Gessner Melissa3,Guiducci Cristiana3,Iuliano James N.3ORCID,Kane Tim3ORCID,Mukerji Ratul3ORCID,Reddy Panga Jaipal3ORCID,Powers Janine3,Sanchez Garcia de los Rios Mateo3,Ye Jordan3ORCID,Barrientos Risso Carla1ORCID,Tsai Daniel1ORCID,Pardo Gabriel1,Notti Ryan Q.8ORCID,Pardo Alejandro1,Affer Maurizio1ORCID,Nawaratne Vindhya1,Totiger Tulasigeri M.1ORCID,Pena-Velasquez Camila2,Rhodes Joanna M.9ORCID,Zelenetz Andrew D.10ORCID,Alencar Alvaro1,Roeker Lindsey E.2ORCID,Mehta Sanjoy11ORCID,Garippa Ralph11,Linley Adam12ORCID,Soni Rajesh Kumar13ORCID,Skånland Sigrid S.256ORCID,Brown Robert J.3ORCID,Mato Anthony R.2,Hansen Gwenn M.3ORCID,Abdel-Wahab Omar2ORCID,Taylor Justin1ORCID

Affiliation:

1. Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine, Miami, FL, USA.

2. Molecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

3. Nurix Therapeutics, San Francisco, CA, USA.

4. Leukemia Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

5. Department of Cancer Immunology, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway.

6. K.G. Jebsen Centre for B Cell Malignancies, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.

7. The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.

8. Laboratory of Molecular Electron Microscopy, Rockefeller University, New York, NY, USA.

9. Division of Hematology-Oncology, Department of Medicine at Zucker School of Medicine at Hofstra/Northwell, CLL Research and Treatment Center, Lake Success, NY, USA.

10. Lymphoma Service, Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA.

11. Gene Editing and Screening Core Facility, Department of Cancer Biology and Genetics, Memorial Sloan Kettering Institute and Cancer Center, New York, NY, USA.

12. Department of Molecular and Clinical Cancer Medicine, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK.

13. Proteomics and Macromolecular Crystallography Shared Resource, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, USA.

Abstract

Increasing use of covalent and noncovalent inhibitors of Bruton’s tyrosine kinase (BTK) has elucidated a series of acquired drug-resistant BTK mutations in patients with B cell malignancies. Here we identify inhibitor resistance mutations in BTK with distinct enzymatic activities, including some that impair BTK enzymatic activity while imparting novel protein-protein interactions that sustain B cell receptor (BCR) signaling. Furthermore, we describe a clinical-stage BTK and IKZF1/3 degrader, NX-2127, that can bind and proteasomally degrade each mutant BTK proteoform, resulting in potent blockade of BCR signaling. Treatment of chronic lymphocytic leukemia with NX-2127 achieves >80% degradation of BTK in patients and demonstrates proof-of-concept therapeutic benefit. These data reveal an oncogenic scaffold function of mutant BTK that confers resistance across clinically approved BTK inhibitors but is overcome by BTK degradation in patients.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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