The Draft Genome of Ciona intestinalis : Insights into Chordate and Vertebrate Origins-Reference-Cited by-同舟云学术

The Draft Genome of Ciona intestinalis : Insights into Chordate and Vertebrate Origins

Published:2002-12-13 Issue:5601 Volume:298 Page:2157-2167
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Dehal Paramvir¹,Satou Yutaka²,Campbell Robert K.³⁴,Chapman Jarrod¹,Degnan Bernard⁵,De Tomaso Anthony⁶,Davidson Brad⁷,Di Gregorio Anna⁷,Gelpke Maarten¹,Goodstein David M.¹,Harafuji Naoe⁷,Hastings Kenneth E. M.⁸,Ho Isaac¹,Hotta Kohji⁹,Huang Wayne¹,Kawashima Takeshi¹⁰,Lemaire Patrick¹¹,Martinez Diego¹,Meinertzhagen Ian A.¹²,Necula Simona¹,Nonaka Masaru¹³,Putnam Nik¹,Rash Sam¹,Saiga Hidetoshi¹⁴,Satake Masanobu¹⁵,Terry Astrid¹,Yamada Lixy²,Wang Hong-Gang¹⁶,Awazu Satoko²,Azumi Kaoru¹⁷,Boore Jeffrey¹,Branno Margherita¹⁸,Chin-bow Stephen¹⁹,DeSantis Rosaria¹⁸,Doyle Sharon¹,Francino Pilar¹,Keys David N.¹⁷,Haga Shinobu⁹,Hayashi Hiroko⁹,Hino Kyosuke²,Imai Kaoru S.²,Inaba Kazuo²⁰,Kano Shungo²¹⁸,Kobayashi Kenji²,Kobayashi Mari²,Lee Byung-In¹,Makabe Kazuhiro W.²,Manohar Chitra¹,Matassi Giorgio¹⁸,Medina Monica¹,Mochizuki Yasuaki²,Mount Steve²¹,Morishita Tomomi⁹,Miura Sachiko⁹,Nakayama Akie²,Nishizaka Satoko⁹,Nomoto Hisayo⁹,Ohta Fumiko⁹,Oishi Kazuko⁹,Rigoutsos Isidore¹⁹,Sano Masako⁹,Sasaki Akane²,Sasakura Yasunori²,Shoguchi Eiichi²,Shin-i Tadasu⁹,Spagnuolo Antoinetta¹⁸,Stainier Didier²²,Suzuki Miho M.²³,Tassy Olivier¹¹,Takatori Naohito²,Tokuoka Miki²,Yagi Kasumi²,Yoshizaki Fumiko¹³,Wada Shuichi²,Zhang Cindy¹,Hyatt P. Douglas²⁴,Larimer Frank²⁴,Detter Chris¹,Doggett Norman²⁵,Glavina Tijana¹,Hawkins Trevor¹,Richardson Paul¹,Lucas Susan¹,Kohara Yuji⁹,Levine Michael⁷²⁶,Satoh Nori²,Rokhsar Daniel S.¹⁷²⁶

Affiliation:

1. U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.

2. Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.

3. Marine Biological Laboratories, Woods Hole, MA 02543, USA.

4. Serono Reproductive Biology Institute, One Technology Place, Rockland, MA 02370, USA.

5. Department of Zoology and Entomology, University of Queensland, Brisbane, Qld 4072, Australia.

6. Department of Pathology, Stanford University School of Medicine, Stanford, CA 93950, USA.

7. Department of Molecular and Cellular Biology, Division of Genetics, 401 Barker Hall, University of California, Berkeley, CA 94720, USA.

8. Montreal Neurological Institute, McGill University, Montreal, H3A 2T5, Canada.

9. National Institute of Genetics, Mishima 411-8540, Japan.

10. Bioinformatics Center, Institute for Chemical Research, Kyoto Univeristy, Uji, Kyoto 611-0011, Japan.

11. LGPD, IBDM, Case 907, Campus de Luminy, F-13288 Marseille Cedex 09, France.

12. Life Sciences Centre, Dalhousie University, Halifax, Nova Scotia, B3H 4J1, Canada.

13. Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo 113-0033, Japan.

14. Department of Biological Sciences, Graduate School of Science, Tokyo Metropolitan University, Hachiohji, Tokyo 192-0397, Japan.

15. Department of Molecular Immunology, Institute of Development, Aging and Cancer, Tohoku University, Seiryo-machi, Aoba-ku, Sendai 980-8575, Japan.

16. Drug Discovery Program, Moffitt Cancer Center, 12902 Magnolia Drive, Tampa, FL 33612, USA.

17. Department of Biochemistry, Graduate School of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan.

18. Stazione Zoologica “Anton Dohrn,” Villa Comunale, 80121 Napoli, Italy.

19. IBM Watson Research Center, Post Office Box 218, Yorktown Heights, NY 10598, USA.

20. Asamushi Marine Biological Station, Graduate School of Science, Tohoku University, Asamushi, Aomori 039-3501, Japan.

21. University of Maryland, College Park, MD 20742, USA.

22. Department of Biochemistry and Biophysics, Programs in Developmental Biology, Genetics, and Human Genetics, University of California, San Francisco, CA 94143, USA.

23. Wellcome Trust Centre for Cell Biology, Institute of Cell and Molecular Biology, University of Edinburgh, Edinburgh EH9 3JR, UK.

24. Oak Ridge National Laboratory, Post Office Box 2008, Oak Ridge, TN 37831, USA.

25. Los Alamos National Laboratory, Los Alamos, NM 87545, USA.

26. Center for Integrative Genomics, University of California, Berkeley 94720, USA.

Abstract

The first chordates appear in the fossil record at the time of the Cambrian explosion, nearly 550 million years ago. The modern ascidian tadpole represents a plausible approximation to these ancestral chordates. To illuminate the origins of chordate and vertebrates, we generated a draft of the protein-coding portion of the genome of the most studied ascidian, Ciona intestinalis . The Ciona genome contains ∼16,000 protein-coding genes, similar to the number in other invertebrates, but only half that found in vertebrates. Vertebrate gene families are typically found in simplified form in Ciona , suggesting that ascidians contain the basic ancestral complement of genes involved in cell signaling and development. The ascidian genome has also acquired a number of lineage-specific innovations, including a group of genes engaged in cellulose metabolism that are related to those in bacteria and fungi.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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