Antibody production relies on the tRNA inosine wobble modification to meet biased codon demand

Author:

Giguère Sophie1ORCID,Wang Xuesong1ORCID,Huber Sabrina2,Xu Liling1ORCID,Warner John1,Weldon Stephanie R.1ORCID,Hu Jennifer2,Phan Quynh Anh1ORCID,Tumang Katie1ORCID,Prum Thavaleak1ORCID,Ma Duanduan3,Kirsch Kathrin H.1,Nair Usha1ORCID,Dedon Peter24ORCID,Batista Facundo D.1567ORCID

Affiliation:

1. The Ragon Institute of Mass General, Massachusetts Institute of Technology (MIT), and Harvard, Cambridge, MA 02139, USA.

2. Department of Biological Engineering, MIT, Cambridge, MA 02139, USA.

3. BioMicro Center, MIT, Cambridge, MA 02139, USA.

4. Singapore-MIT Alliance for Research and Technology, Singapore 138602.

5. Department of Immunology, Harvard Medical School, Boston, MA 02115, USA.

6. Department of Microbiology, Harvard Medical School, Boston, MA 02115, USA.

7. Department of Biology, MIT, Cambridge, MA 02139, USA.

Abstract

Antibodies are produced at high rates to provide immunoprotection, which puts pressure on the B cell translational machinery. Here, we identified a pattern of codon usage conserved across antibody genes. One feature thereof is the hyperutilization of codons that lack genome-encoded Watson-Crick transfer RNAs (tRNAs), instead relying on the posttranscriptional tRNA modification inosine (I34), which expands the decoding capacity of specific tRNAs through wobbling. Antibody-secreting cells had increased I34 levels and were more reliant on I34 for protein production than naïve B cells. Furthermore, antibody I34-dependent codon usage may influence B cell passage through regulatory checkpoints. Our work elucidates the interface between the tRNA pool and protein production in the immune system and has implications for the design and selection of antibodies for vaccines and therapeutics.

Publisher

American Association for the Advancement of Science (AAAS)

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