Cryptic transmission of SARS-CoV-2 in Washington state

Author:

Bedford Trevor123ORCID,Greninger Alexander L.14ORCID,Roychoudhury Pavitra14ORCID,Starita Lea M.23ORCID,Famulare Michael5ORCID,Huang Meei-Li14ORCID,Nalla Arun4,Pepper Gregory4,Reinhardt Adam4ORCID,Xie Hong4,Shrestha Lasata4ORCID,Nguyen Truong N.4,Adler Amanda6,Brandstetter Elisabeth7ORCID,Cho Shari23ORCID,Giroux Danielle3ORCID,Han Peter D.23ORCID,Fay Kairsten1ORCID,Frazar Chris D.3ORCID,Ilcisin Misja1ORCID,Lacombe Kirsten6,Lee Jover1ORCID,Kiavand Anahita23ORCID,Richardson Matthew3ORCID,Sibley Thomas R.1ORCID,Truong Melissa23ORCID,Wolf Caitlin R.7ORCID,Nickerson Deborah A.23,Rieder Mark J.23ORCID,Englund Janet A.268ORCID,Hadfield James1ORCID,Hodcroft Emma B.910ORCID,Huddleston John111ORCID,Moncla Louise H.1,Müller Nicola F.1ORCID,Neher Richard A.910ORCID,Deng Xianding12ORCID,Gu Wei12ORCID,Federman Scot12ORCID,Chiu Charles12ORCID,Duchin Jeffrey S.713ORCID,Gautom Romesh14ORCID,Melly Geoff14ORCID,Hiatt Brian14ORCID,Dykema Philip14,Lindquist Scott14ORCID,Queen Krista15,Tao Ying15,Uehara Anna15ORCID,Tong Suxiang15ORCID,MacCannell Duncan16ORCID,Armstrong Gregory L.16,Baird Geoffrey S.4ORCID,Chu Helen Y.27,Shendure Jay2317ORCID,Jerome Keith R.14ORCID,Chu Helen Y.,Boeckh Michael,Englund Janet A.,Famulare Michael,Lutz Barry R.,Nickerson Deborah A.,Rieder Mark J.,Starita Lea M.,Thompson Matthew,Shendure Jay,Bedford Trevor,Adler Amanda,Brandstetter Elisabeth,Cho Shari,Frazar Chris D.,Giroux Danielle,Han Peter D.,Hadfield James,Huang Shichu,Jackson Michael L.,Kiavand Anahita,Kimball Louise E.,Lacombe Kirsten,Logue Jennifer,Lyon Victoria,Newman Kira L.,Richardson Matthew,Sibley Thomas R.,Zigman Suchsland Monica L.,Truong Melissa,Wolf Caitlin R.,

Affiliation:

1. Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.

2. Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.

3. Department of Genome Sciences, University of Washington, Seattle, WA, USA.

4. Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA.

5. Institute for Disease Modeling, Bellevue, WA, USA.

6. Division of Infectious Disease, Seattle Children’s Hospital, Seattle, WA, USA.

7. Department of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, WA, USA.

8. Department of Pediatrics, University of Washington, Seattle, WA, USA.

9. Biozentrum, University of Basel, Basel, Switzerland.

10. Swiss Institute of Bioinformatics, Lausanne, Switzerland.

11. Molecular and Cellular Biology Program, University of Washington, Seattle, WA, USA.

12. Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, USA.

13. Public Health — Seattle & King County, Seattle, WA, USA.

14. Washington State Department of Health, Shoreline, WA, USA.

15. Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.

16. Office of Advanced Molecular Detection, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.

17. Howard Hughes Medical Institute, Seattle, WA, USA.

Abstract

A series of unfortunate events The history of how severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spread around the planet has been far from clear. Several narratives have been propagated by social media and, in some cases, national policies were forged in response. Now that many thousands of virus sequences are available, two studies analyzed some of the key early events in the spread of SARS-CoV-2. Bedford et al. found that the virus arrived in Washington state in late January or early February. The viral genome from the first case detected had mutations similar to those found in Chinese samples and rapidly spread and dominated subsequent undetected community transmission. The other viruses detected had origins in Europe. Worobey et al. found that early introductions into Germany and the west coast of the United States were extinguished by vigorous public health efforts, but these successes were largely unrecognized. Unfortunately, several major travel events occurred in February, including repatriations from China, with lax public health follow-up. Serial, independent introductions triggered the major outbreaks in the United States and Europe that still hold us in the grip of control measures. Science , this issue p. 571 , p. 564

Funder

National Institutes of Health

Howard Hughes Medical Institute

National Institute of General Medical Sciences

National Institute of Allergy and Infectious Diseases

Washington State Department of Health

Gates Ventures

Charles and Helen Schwab Foundation

Pew Charitable Trusts

University of Basel

Burroughs Wellcome Fund

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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