Epigenetic plasticity cooperates with cell-cell interactions to direct pancreatic tumorigenesis

Author:

Burdziak Cassandra12ORCID,Alonso-Curbelo Direna34ORCID,Walle Thomas1567ORCID,Reyes José13ORCID,Barriga Francisco M.3,Haviv Doron12,Xie Yubin12ORCID,Zhao Zhen38ORCID,Zhao Chujun Julia19ORCID,Chen Hsuan-An3ORCID,Chaudhary Ojasvi110,Masilionis Ignas110ORCID,Choo Zi-Ning1,Gao Vianne12,Luan Wei3,Wuest Alexandra3,Ho Yu-Jui3ORCID,Wei Yuhong11ORCID,Quail Daniela F.11ORCID,Koche Richard12ORCID,Mazutis Linas1913ORCID,Chaligné Ronan110ORCID,Nawy Tal1ORCID,Lowe Scott W.314ORCID,Pe’er Dana114ORCID

Affiliation:

1. Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.

2. Tri-Institutional Training Program in Computational Biology and Medicine, Weill Cornell Medicine, New York, NY 10065, USA.

3. Cancer Biology and Genetics Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.

4. Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, 08028 Barcelona, Spain.

5. Clinical Cooperation Unit Virotherapy, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany.

6. Department of Medical Oncology, National Center for Tumor Diseases, Heidelberg University Hospital, 69120 Heidelberg, Germany.

7. German Cancer Consortium (DKTK), 69120 Heidelberg, Germany.

8. Department of Pathology, Molecular and Cell-Based Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

9. Department of Biomedical Engineering, Columbia University, New York, NY 10027, USA.

10. Alan and Sandra Gerry Metastasis and Tumor Ecosystems Center, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.

11. Rosalind and Morris Goodman Cancer Institute, McGill University, Montreal, Quebec H3A 1A3, Canada.

12. Center for Epigenetics Research, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.

13. Institute of Biotechnology, Life Sciences Centre, Vilnius University, 02158 Vilnius, Lithuania.

14. Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.

Abstract

The response to tumor-initiating inflammatory and genetic insults can vary among morphologically indistinguishable cells, suggesting as yet uncharacterized roles for epigenetic plasticity during early neoplasia. To investigate the origins and impact of such plasticity, we performed single-cell analyses on normal, inflamed, premalignant, and malignant tissues in autochthonous models of pancreatic cancer. We reproducibly identified heterogeneous cell states that are primed for diverse, late-emerging neoplastic fates and linked these to chromatin remodeling at cell-cell communication loci. Using an inference approach, we revealed signaling gene modules and tissue-level cross-talk, including a neoplasia-driving feedback loop between discrete epithelial and immune cell populations that was functionally validated in mice. Our results uncover a neoplasia-specific tissue-remodeling program that may be exploited for pancreatic cancer interception.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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