The B73 Maize Genome: Complexity, Diversity, and Dynamics
Author:
Schnable Patrick S.1234, Ware Doreen56, Fulton Robert S.7, Stein Joshua C.6, Wei Fusheng8, Pasternak Shiran6, Liang Chengzhi6, Zhang Jianwei8, Fulton Lucinda7, Graves Tina A.7, Minx Patrick7, Reily Amy Denise7, Courtney Laura7, Kruchowski Scott S.7, Tomlinson Chad7, Strong Cindy7, Delehaunty Kim7, Fronick Catrina7, Courtney Bill7, Rock Susan M.7, Belter Eddie7, Du Feiyu7, Kim Kyung7, Abbott Rachel M.7, Cotton Marc7, Levy Andy7, Marchetto Pamela7, Ochoa Kerri7, Jackson Stephanie M.7, Gillam Barbara7, Chen Weizu7, Yan Le7, Higginbotham Jamey7, Cardenas Marco7, Waligorski Jason7, Applebaum Elizabeth7, Phelps Lindsey7, Falcone Jason7, Kanchi Krishna7, Thane Thynn7, Scimone Adam7, Thane Nay7, Henke Jessica7, Wang Tom7, Ruppert Jessica7, Shah Neha7, Rotter Kelsi7, Hodges Jennifer7, Ingenthron Elizabeth7, Cordes Matt7, Kohlberg Sara7, Sgro Jennifer7, Delgado Brandon7, Mead Kelly7, Chinwalla Asif7, Leonard Shawn7, Crouse Kevin7, Collura Kristi8, Kudrna Dave8, Currie Jennifer8, He Ruifeng8, Angelova Angelina8, Rajasekar Shanmugam8, Mueller Teri8, Lomeli Rene8, Scara Gabriel8, Ko Ara8, Delaney Krista8, Wissotski Marina8, Lopez Georgina8, Campos David8, Braidotti Michele8, Ashley Elizabeth8, Golser Wolfgang8, Kim HyeRan8, Lee Seunghee8, Lin Jinke8, Dujmic Zeljko8, Kim Woojin8, Talag Jayson8, Zuccolo Andrea8, Fan Chuanzhu8, Sebastian Aswathy8, Kramer Melissa6, Spiegel Lori6, Nascimento Lidia6, Zutavern Theresa6, Miller Beth6, Ambroise Claude6, Muller Stephanie6, Spooner Will6, Narechania Apurva6, Ren Liya6, Wei Sharon6, Kumari Sunita6, Faga Ben6, Levy Michael J.6, McMahan Linda6, Van Buren Peter6, Vaughn Matthew W.6, Ying Kai3, Yeh Cheng-Ting12, Emrich Scott J.910, Jia Yi3, Kalyanaraman Ananth911, Hsia An-Ping12, Barbazuk W. Brad12, Baucom Regina S.13, Brutnell Thomas P.14, Carpita Nicholas C.15, Chaparro Cristian16, Chia Jer-Ming6, Deragon Jean-Marc16, Estill James C.1317, Fu Yan24, Jeddeloh Jeffrey A.18, Han Yujun1317, Lee Hyeran19, Li Pinghua14, Lisch Damon R.20, Liu Sanzhen3, Liu Zhijie6, Nagel Dawn Holligan1317, McCann Maureen C.21, SanMiguel Phillip22, Myers Alan M.23, Nettleton Dan24, Nguyen John25, Penning Bryan W.1521, Ponnala Lalit26, Schneider Kevin L.27, Schwartz David C.28, Sharma Anupma27, Soderlund Carol29, Springer Nathan M.30, Sun Qi26, Wang Hao1317, Waterman Michael25, Westerman Richard22, Wolfgruber Thomas K.27, Yang Lixing13, Yu Yeisoo29, Zhang Lifang6, Zhou Shiguo28, Zhu Qihui1317, Bennetzen Jeffrey L.13, Dawe R. Kelly1317, Jiang Jiming19, Jiang Ning31, Presting Gernot G.27, Wessler Susan R.1317, Aluru Srinivas1932, Martienssen Robert A.6, Clifton Sandra W.7, McCombie W. Richard6, Wing Rod A.8, Wilson Richard K.733
Affiliation:
1. Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA. 2. Department of Agronomy, Iowa State University, Ames, IA 50011, USA. 3. Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA. 4. Center for Carbon Capturing Crops, Iowa State University, Ames, IA 50011, USA. 5. U.S. Department of Agriculture (USDA), North Atlantic Area, Robert Holley Center for Agriculture and Health, Ithaca, NY 14853, USA. 6. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA. 7. The Genome Center at Washington University, St. Louis, MO 63108, USA. 8. Arizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USA. 9. Department of Electrical and Computer Engineering, Iowa State University, Ames, IA 50011, USA. 10. Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN 46556, USA. 11. School of Electrical Engineering and Computer Science, Washington State University, Pullman, WA 99164, USA. 12. Department of Botany, University of Florida, Gainesville, FL 32611, USA. 13. Department of Genetics, University of Georgia, Athens, GA 30602, USA. 14. Boyce Thompson Institute, Cornell University, Ithaca, NY 14853, USA. 15. Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA. 16. Université de Perpignan Via Domitia, CNRS, Perpignan, France. 17. Department of Plant Biology, University of Georgia, Athens, GA 30602, USA. 18. NimbleGen, Madison, WI 53711, USA. 19. Department of Horticulture, University of Wisconsin–Madison, Madison, WI 53706, USA. 20. Department of Plant Biology, University of California, Berkeley, CA, 94720, USA. 21. Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA. 22. Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA. 23. Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, IA, 50011, USA. 24. Department of Statistics, Iowa State University, Ames, IA 50011, USA. 25. Departments of Mathematics, Biology, and Computer Science, University of Southern California, Los Angeles, CA 90089, USA. 26. Cornell University Computational Biology Service Unit, Cornell University, Ithaca, NY 14850, USA. 27. Molecular Biosciences and Bioengineering, University of Hawaii, Honolulu, HI 96822, USA. 28. Laboratory for Molecular and Computational Genomics, Department of Chemistry, Laboratory of Genetics, University of Wisconsin–Madison, Madison, WI 53706, USA. 29. BIO5 Institute for Collaborative Research, University of Arizona, Tucson, AZ 85721, USA. 30. Department of Plant Biology, University of Minnesota, St. Paul, MN 55108, USA. 31. Department of Horticulture, Michigan State University, East Lansing, MI 48824, USA. 32. Indian Institute of Technology, Bombay, India. 33. Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Abstract
A-Maize-ing
Maize is one of our oldest and most important crops, having been domesticated approximately 9000 years ago in central Mexico.
Schnable
et al.
(p.
1112
; see the cover) present the results of sequencing the B73 inbred maize line. The findings elucidate how maize became diploid after an ancestral doubling of its chromosomes and reveals transposable element movement and activity and recombination.
Vielle-Calzada
et al.
(p.
1078
) have sequenced the
Palomero Toluqueño
(
Palomero
) landrace, a highland popcorn from Mexico, which, when compared to the B73 line, reveals multiple loci impacted by domestication.
Swanson-Wagner
et al.
(p.
1118
) exploit possession of the genome to analyze expression differences occurring between lines. The identification of single nucleotide polymorphisms and copy number variations among lines was used by
Gore
et al.
(p.
1115
) to generate a Haplotype map of maize. While chromosomal diversity in maize is high, it is likely that recombination is the major force affecting the levels of heterozygosity in maize. The availability of the maize genome will help to guide future agricultural and biofuel applications (see the Perspective by
Feuillet and Eversole
).
Publisher
American Association for the Advancement of Science (AAAS)
Subject
Multidisciplinary
Cited by
3348 articles.
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