Multiple rereads of single proteins at single–amino acid resolution using nanopores

Abstract

Reading amino acids by nanopore Nanopore technology enables sensing of minute chemical changes at the single-molecule level by detecting differences in an ion current as molecules are drawn through a membrane-embedded pore. The sensitivity is sufficient to discriminate between nucleotide bases in nanopore sequencing, and other applications of this technology are promising. Brinkerhoff et al . developed a nanopore-based, single-molecule approach in which a protein was sequentially scanned in single-amino-acid steps through the narrow construction of a nanopore, and ion currents were monitored to resolve differences in the amino acid sequence along the peptide backbone (see the Perspective by Bošković and Keyser). The peptide reader was capable of reliably detecting single-amino-acid substitutions within individual peptides. An individual protein could be re-read many times, yielding very high read accuracy in variant identification. These proof-of-concept nanopore experiments constitute a promising basis for the development of a single-molecule protein sequencer. —DJ