A geometrical model of cell fate specification in the mouse blastocyst

Author:

Raju Archishman123ORCID,Siggia Eric D.4ORCID

Affiliation:

1. Simons Centre for the Study of Living Machines 1 , , , Bangalore 560065 , India

2. National Centre for Biological Sciences 1 , , , Bangalore 560065 , India

3. Tata Institute of Fundamental Research 1 , , , Bangalore 560065 , India

4. Center for Studies in Physics and Biology, Rockefeller University 2 , New York, NY 10065 , USA

Abstract

ABSTRACT The lineage decision that generates the epiblast and primitive endoderm from the inner cell mass (ICM) is a paradigm for cell fate specification. Recent mathematics has formalized Waddington's landscape metaphor and proven that lineage decisions in detailed gene network models must conform to a small list of low-dimensional stereotypic changes called bifurcations. The most plausible bifurcation for the ICM is the so-called heteroclinic flip that we define and elaborate here. Our re-analysis of recent data suggests that there is sufficient cell movement in the ICM so the FGF signal, which drives the lineage decision, can be treated as spatially uniform. We thus extend the bifurcation model for a single cell to the entire ICM by means of a self-consistently defined time-dependent FGF signal. This model is consistent with available data and we propose additional dynamic experiments to test it further. This demonstrates that simplified, quantitative and intuitively transparent descriptions are possible when attention is shifted from specific genes to lineages. The flip bifurcation is a very plausible model for any situation where the embryo needs control over the relative proportions of two fates by a morphogen feedback.

Funder

Department of Atomic Energy, Government of India

Simons Foundation

National Science Foundation

Rockefeller University

Publisher

The Company of Biologists

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