Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites-Reference-Cited by-同舟云学术

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Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites

Published:2015-03-19 Issue:2 Volume:12 Page:025002
ISSN:1478-3975
Container-title:Physical Biology
language:
Short-container-title:Phys. Biol.

Author:

Echave Julian,Jackson Eleisha L,Wilke Claus O

Funder

Defense Threat Reduction Agency:

Army Research Office:

National Institute of General Medical Sciences:

Consejo Nacional de Investigaciones Científicas y Técnicas

National Science Foundation, Division of Graduate Education:

Division of Biological Infrastructure:

Publisher

IOP Publishing

Subject

Cell Biology,Molecular Biology,Structural Biology,Biophysics

Link

http://stacks.iop.org/1478-3975/12/i=2/a=025002/pdf

Reference51 articles.

1. Protein evolution along phylogenetic histories under structurally constrained substitution models

2. Mutational effects on stability are largely conserved during protein evolution

3. Robustness–epistasis link shapes the fitness landscape of a randomly drifting protein

4. Inferring Stabilizing Mutations from Protein Phylogenies: Application to Influenza Hemagglutinin

5. Protein stability promotes evolvability

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1. Improved prediction of site‐rates from structure with averaging across homologs;Protein Science;2024-06-25

2. Accurate prediction of site- and amino-acid substitution rates with a mutation-selection model;2024-03-06

3. Improved prediction of site-rates from structure with averaging across homologs;2024-03-01

4. A mutational atlas for Parkin proteostasis;Nature Communications;2024-02-20

5. Atomistic simulation of protein evolution reveals sequence covariation and time-dependent fluctuations of site-specific substitution rates;PLOS Computational Biology;2023-03-24

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