IL-7R licenses a population of epigenetically poised memory CD8 + T cells with superior antitumor efficacy that are critical for melanoma memory

Author:

Micevic Goran12ORCID,Daniels Andrew13,Flem-Karlsen Karine2ORCID,Park Koonam2,Talty Ronan3,McGeary Meaghan3,Mirza Haris13,Blackburn Holly N.14,Sefik Esen1,Cheung Julie F.1,Hornick Noah I.1ORCID,Aizenbud Lilach56,Joshi Nikhil S.1,Kluger Harriet567,Iwasaki Akiko178ORCID,Bosenberg Marcus W.12357,Flavell Richard A.158

Affiliation:

1. Department of Immunobiology, Yale School of Medicine, New Haven, CT 06520

2. Department of Dermatology, Yale School of Medicine, New Haven, CT 06520

3. Department of Pathology, Yale School of Medicine, New Haven, CT 06520

4. Department of Surgery, Yale School of Medicine, New Haven, CT 06520

5. Yale Cancer Center, Yale School of Medicine, New Haven, CT 06520

6. Department of Medicine (Medical Oncology), Yale School of Medicine, New Haven, CT 06520

7. Yale Stem Cell Center, Yale School of Medicine, New Haven, CT 06520

8. HHMI, Chevy Chase, MD 20815

Abstract

Recurrence of advanced melanoma after therapy is a major risk factor for reduced survival, and treatment options are limited. Antitumor immune memory plays a critical role in preventing melanoma recurrence and memory T cells could be a potent cell-based therapy, but the identity, and functional properties of the required immune cells are incompletely understood. Here, we show that an IL-7R hi tumor-specific CD8 + population is critical for antitumor memory and can be epigenetically augmented to drive powerful antitumor immune responses. Using a model of functional antimelanoma memory, we found that high IL-7R expression selectively marks a CD8 + population in lymphoid organs that plays critical roles in maintaining tumor remission after immunotherapy or surgical resection. This population has intrinsic cytotoxic activity, lacks markers of exhaustion and has superior antitumor efficacy. IL-7Rhi cells have a functionally poised epigenetic landscape regulated by DNA methylation, which can be augmented by hypomethylating agents to confer improved survival and complete melanoma clearance in naive mice. Importantly, greater than 95% of tumor-specific T cells in draining lymph nodes after therapy express high levels of IL-7R. This overlap between IL-7R hi and antigen-specific T cells allows for enrichment of a potent functional CD8 + population without determining antigen-specificity, which we demonstrate in a melanoma model without a known antigen. We identify that IL-7R expression in human melanoma is an independent prognostic factor of improved survival. These findings advance our basic understanding of antitumor memory and suggest a cell-based therapy using high IL-7R expression to enrich for a lymph node population with superior antitumor activity that can be augmented by hypomethylating agents.

Funder

HHS | NIH | National Institute of Allergy and Infectious Diseases

Dermatology Foundation

American Skin Association

HHS | NIH | National Cancer Institute

Melanoma Research Alliance

Howard Hughes Medical Institute

Publisher

Proceedings of the National Academy of Sciences

Subject

Multidisciplinary

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