Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020-Reference-Cited by-同舟云学术

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

Published:2020-08-13 Issue:32 Volume:25 Page:
ISSN:1560-7917
Container-title:Eurosurveillance
language:en
Short-container-title:

Author:

Alm Erik¹^ORCID,Broberg Eeva K¹^ORCID,Connor Thomas²³^ORCID,Hodcroft Emma B⁴^ORCID,Komissarov Andrey B⁵^ORCID,Maurer-Stroh Sebastian⁶⁷⁸⁹^ORCID,Melidou Angeliki¹^ORCID,Neher Richard A⁴^ORCID,O’Toole Áine¹⁰^ORCID,Pereyaslov Dmitriy¹¹,

Affiliation:

1. The European Centre for Disease Prevention and Control, Stockholm, Sweden

2. Cardiff University School of Biosciences, Cardiff, United Kingdom

3. Public Health Wales Microbiology, Cardiff, United Kingdom

4. Biozentrum, University of Basel, Basel, Switzerland

5. Smorodintsev Research Institute of Influenza, Saint Petersburg, Russian Federation

6. Global Initiative on Sharing All Influenza Data (GISAID), Munich, Germany

7. National Public Health Laboratory, National Centre for Infectious Diseases, Ministry of Health, Singapore, Singapore

8. Bioinformatics Institute, Agency for Science Technology and Research, Singapore, Singapore

9. Department of Biological Sciences, National University of Singapore, Singapore, Singapore

10. University of Edinburgh, Edinburgh, United Kingdom

11. Health Emergency Programme, WHO Regional Office for Europe, Copenhagen, Denmark

Abstract

We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

Publisher

European Centre for Disease Control and Prevention (ECDC)

Subject

Virology,Public Health, Environmental and Occupational Health,Epidemiology

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