Redox, haem and CO in enzymatic catalysis and regulation

Author:

Ragsdale Stephen W.1,Yi Li1,Bender Güneş1,Gupta Nirupama1,Kung Yan2,Yan Lifen3,Stich Troy A.3,Doukov Tzanko4,Leichert Lars5,Jenkins Paul M.6,Bianchetti Christopher M.7,George Simon J.3,Cramer Stephen P.38,Britt R. David3,Jakob Ursula5,Martens Jeffrey R.6,Phillips George N.7,Drennan Catherine L.2

Affiliation:

1. Department of Biological Chemistry, University of Michigan, Ann Arbor, MI 48109, U.S.A.

2. Departments of Chemistry and Biology, Massachusetts Institute of Technology, 16-573A, 77 Massachusetts Avenue, Cambridge, MA 02139, U.S.A.

3. Department of Chemistry, University of California, Davis, Davis, CA 95616, U.S.A.

4. Stanford Synchrotron Radiation Lightsource, Menlo Park, CA 94025, U.S.A.

5. Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, U.S.A.

6. Department of Pharmacology, University of Michigan, Ann Arbor, MI 48109, U.S.A.

7. Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, U.S.A.

8. †Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, U.S.A.

Abstract

The present paper describes general principles of redox catalysis and redox regulation in two diverse systems. The first is microbial metabolism of CO by the Wood–Ljungdahl pathway, which involves the conversion of CO or H2/CO2 into acetyl-CoA, which then serves as a source of ATP and cell carbon. The focus is on two enzymes that make and utilize CO, CODH (carbon monoxide dehydrogenase) and ACS (acetyl-CoA synthase). In this pathway, CODH converts CO2 into CO and ACS generates acetyl-CoA in a reaction involving Ni·CO, methyl-Ni and acetyl-Ni as catalytic intermediates. A 70 Å (1 Å=0.1 nm) channel guides CO, generated at the active site of CODH, to a CO ‘cage’ near the ACS active site to sequester this reactive species and assure its rapid availability to participate in a kinetically coupled reaction with an unstable Ni(I) state that was recently trapped by photolytic, rapid kinetic and spectroscopic studies. The present paper also describes studies of two haem-regulated systems that involve a principle of metabolic regulation interlinking redox, haem and CO. Recent studies with HO2 (haem oxygenase-2), a K+ ion channel (the BK channel) and a nuclear receptor (Rev-Erb) demonstrate that this mode of regulation involves a thiol–disulfide redox switch that regulates haem binding and that gas signalling molecules (CO and NO) modulate the effect of haem.

Publisher

Portland Press Ltd.

Subject

Biochemistry

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