GTP-dependent formation of straight tubulin oligomers leads to microtubule nucleation

Author:

Ayukawa Rie1ORCID,Iwata Seigo1,Imai Hiroshi2ORCID,Kamimura Shinji2ORCID,Hayashi Masahito1ORCID,Ngo Kien Xuan1ORCID,Minoura Itsushi1ORCID,Uchimura Seiichi1,Makino Tsukasa1ORCID,Shirouzu Mikako3,Shigematsu Hideki3ORCID,Sekimoto Ken45ORCID,Gigant Benoît6ORCID,Muto Etsuko1ORCID

Affiliation:

1. Laboratory for Molecular Biophysics, RIKEN Center for Brain Science, Saitama, Japan

2. Department of Biological Sciences, Faculty of Science and Engineering, Chuo University, Tokyo, Japan

3. Laboratory for Protein Functional and Structural Biology, RIKEN Center for Biosystems Dynamics Research, Yokohama, Japan

4. Matière et Systèmes Complexes (MSC), CNRS UMR 7057, Université de Paris, Paris, France

5. Gulliver, CNRS UMR 7083, ESPCI Paris and Université Paris Sciences et Lettres, Paris, France

6. Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France

Abstract

Nucleation of microtubules (MTs) is essential for cellular activities, but its mechanism is unknown because of the difficulty involved in capturing rare stochastic events in the early stage of polymerization. Here, combining rapid flush negative stain electron microscopy (EM) and kinetic analysis, we demonstrate that the formation of straight oligomers of critical size is essential for nucleation. Both GDP and GTP tubulin form single-stranded oligomers with a broad range of curvatures, but upon nucleation, the curvature distribution of GTP oligomers is shifted to produce a minor population of straight oligomers. With tubulin having the Y222F mutation in the β subunit, the proportion of straight oligomers increases and nucleation accelerates. Our results support a model in which GTP binding generates a minor population of straight oligomers compatible with lateral association and further growth to MTs. This study suggests that cellular factors involved in nucleation promote it via stabilization of straight oligomers.

Funder

Ministry of Education, Culture, Sports, Science, and Technology

Fondation ARC pour la Recherche sur le Cancer

Publisher

Rockefeller University Press

Subject

Cell Biology

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