Assessment of single-nucleotide variant discovery protocols in RNA-seq data from human cells exposed to mycotoxins-Reference-Cited by-同舟云学术

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Assessment of single-nucleotide variant discovery protocols in RNA-seq data from human cells exposed to mycotoxins

Published:2022-09-01 Issue:3 Volume:33 Page:215-221
ISSN:1537-6516
Container-title:Toxicology Mechanisms and Methods
language:en
Short-container-title:Toxicology Mechanisms and Methods

Author:

Alonso-Garrido M.¹,Lozano M.¹²^ORCID,Riffo-Campos A. L.³⁴,Font G.¹,Vila-Donat P.¹,Manyes L.¹

Affiliation:

1. Laboratory of Food Chemistry and Toxicology, Faculty of Pharmacy, University of Valencia, Burjassot, Spain

2. Epidemiology and Environmental Health Joint Research Unit, FISABIO − Universitat Jaume I − Universitat de València, València, Spain

3. Millennium Nucleus on Sociomedicine (SocioMed) and Vicerrectoría Académica, Universidad de La Frontera, Temuco, Chile

4. Department of Computer Science, ETSE, University of Valencia, Valencia, Spain

Funder

Ministry of Science and Innovation

Ministry of Universities

Spanish University

European Union

NextGeneration EU

Publisher

Informa UK Limited

Subject

Health, Toxicology and Mutagenesis,Toxicology

Link

https://www.tandfonline.com/doi/pdf/10.1080/15376516.2022.2117673

Reference30 articles.

1. Variant analysis pipeline for accurate detection of genomic variants from transcriptome sequencing data

2. Aflatoxin B1 induces the transversion of G-->T in codon 249 of the p53 tumor suppressor gene in human hepatocytes.

3. Mitochondrial proteomics profile points oxidative phosphorylation as main target for beauvericin and enniatin B mixture

4. Mitochondrial transcriptional study of the effect of aflatoxins, enniatins and carotenoids in vitro in a blood brain barrier model

5. Enniatin B induces expression changes in the electron transport chain pathway related genes in lymphoblastic T-cell line

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