A new efficient quorum planted (ℓ, d) motif search on ChIP-seq dataset using segmentation to filtration and freezing firefly algorithms
Author:
Publisher
Springer Science and Business Media LLC
Subject
Geometry and Topology,Theoretical Computer Science,Software
Link
https://link.springer.com/content/pdf/10.1007/s00500-023-09236-z.pdf
Reference74 articles.
1. Abbass MM, Bahig HM (2013) An efficient algorithm to identify DNA motifs. Math Comput Sci 7(4):387–399
2. Bailey TL, Williams N, Misleh C et al (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res 34:369–373
3. Bailey TL, Boden M, Buske A et al (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 37(May):202–208
4. Bandyopadhyay S, Sahni S and Rajasekaran S (2012) PMS6: a fast algorithm for motif discovery. In: 2012 IEEE 2nd Int. Conf. Comput. Adv. Bio Med. Sci. ICCABS 2012, pp 1–6. https://doi.org/10.1109/ICCABS.2012.6182627
5. Boeva V et al (2010) De novo motif identification improves the accuracy of predicting transcription factor binding sites in ChIP-Seq data analysis. Nucleic Acids Res 38(11):1–9. https://doi.org/10.1093/nar/gkq217
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