UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction-Reference-Cited by-同舟云学术

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UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction

Published:2018-02-28 Issue:4 Volume:56 Page:280-285
ISSN:1225-8873
Container-title:Journal of Microbiology
language:en
Short-container-title:J Microbiol.

Author:

Na Seong-In,Kim Yeong Ouk,Yoon Seok-Hwan,Ha Sung-min,Baek Inwoo,Chun Jongsik

Publisher

Springer Science and Business Media LLC

Subject

Applied Microbiology and Biotechnology,General Medicine,Microbiology

Link

http://link.springer.com/article/10.1007/s12275-018-8014-6/fulltext.html

Reference26 articles.

1. Ankenbrand, M.J. and Keller, A. 2016. bcgTree: automatized phylogenetic tree building from bacterial core genomes. Genome 59, 783–791.

2. Chun, J. and Rainey, F.A. 2014. Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea. Int. J. Syst. Evol. Microbiol. 64, 316–324.

3. Chun, J., Oren, A., Ventosa, A., Christensen, H., Arahal, D.R., da Costa, M.S., Rooney, A.P., Yi, H., Xu, X.W., De Meyer, S., et al. 2018. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int. J. Syst. Evol. Microbiol. 68, 461–466.

4. Creevey, C.J., Doerks, T., Fitzpatrick, D.A., Raes, J., and Bork, P. 2011. Universally distributed single-copy genes indicate a constant rate of horizontal transfer. PLoS One 6, e22099.

5. Darling, A.E., Jospin, G., Lowe, E., Matsen, F.I., Bik, H.M., and Eisen, J.A. 2014. PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2, e243.

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