1. Li H (2013) Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv:1303.3997v2. https://arxiv.org/abs/1303.3997
2. “Picard Toolkit.” 2019. Broad institute, GitHub repository. http://broadinstitute.github.io/picard/, Broad Institute
3. DePristo M, Banks E, Poplin R, Garimella K, Maguire J, Hartl C, Philippakis A, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell T, Kernytsky A, Sivachenko A, Cibulskis K, Gabriel S, Altshuler D, Daly M (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43:491–498. https://doi.org/10.1038/ng.806
4. BWA manual. http://bio-bwa.sourceforge.net/bwa.shtml
5. Sentieon GitHub example scripts repository. https://github.com/Sentieon/sentieon-scripts/tree/master/example_pipelines