SHAPE to Probe RNA Structure and RNA–Protein Interactions In Vitro
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Publisher
Springer US
Link
https://link.springer.com/content/pdf/10.1007/978-1-0716-3191-1_5
Reference12 articles.
1. Dethoff EA, Chugh J, Mustoe AM, Al-Hashimi HM (2012) Functional complexity and regulation through RNA dynamics. Nature 482(7385):322–330. https://doi.org/10.1038/nature10885
2. England WE, Garfio CM, Spitale RC (2021) Chemical approaches to analyzing RNA structure transcriptome-wide. Chembiochem 22(7):1114–1121. https://doi.org/10.1002/cbic.202000340
3. Merino EJ, Wilkinson KA, Coughlan JL, Weeks KM (2005) RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J Am Chem Soc 127(12):4223–4231. https://doi.org/10.1021/ja043822v
4. Smola MJ, Rice GM, Busan S, Siegfried NA, Weeks KM (2015) Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis. Nat Protoc 10(11):1643–1669. https://doi.org/10.1038/nprot.2015.103
5. Saha K, England W, Fernandez MM, Biswas T, Spitale RC, Ghosh G (2020) Structural disruption of exonic stem–loops immediately upstream of the intron regulates mammalian splicing. Nucleic Acids Res 48(11):6294–6309. https://doi.org/10.1093/nar/gkaa358
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